That the relay is clicking tells me you are getting power,
Odds are, the wires in the harness are broken, drivers rear, under truck, where harness comes from body to tailgate, check the harness there, looking closely at the blue and blue w/white wires. pull on them, they'll more than likely be broken internally. that is the most common problem area.
If you have had the hard top bolts out, driver side, next to rear down tube of roll bar, be sure that bolt is in place and snug, ( there is a switch under that bolt hole that the bolt pushes on when installed ) many guys spin the bolts back into the holes for safe keeping, and break the switch off.
aLso make sure the rear wiper is plugged in at the top connection, and is in parked position.