Lucky of me to stumble on this post with my plethora of experience with this transmission and its issues.....
Figuring out the issue is hard to do without getting eyes on it(pulling it), by that point if the problem isn't staring you in the face during your inspection you'll have nothing but uncertainty if you put it back together. I'm speaking from experience as someone who's pulled my NV56 in my driveway 3 times with the help of friends chasing an issue that ultimately isn't resolved despite being drivable.
Before pulling it try checking the hydraulics for full travel, you can check the release fork for its travel by pulling the slave off and manually pushing the end of the fork, granted you won't get full travel but the point is to feel for binding on the portion that you can push. You can stick a bore scope through the hole where the slave mounts to and visually check the condition. If you want to parts cannon it before pulling, new hydraulics would be just about the only thing to throw at it until you pull it. Since you mentioned rust, the floater plate could be dragging in its slots and not re-seating on clutch release. Constant clutch actuation
could help unstick it, if its the problem.
This excerpt on hydro testing is from South Bends "New" Website :
- Check that the reservoir is full, and there are no leaks around the master cylinder on the firewall, or at the slave cylinder at the bellhousing.
- On units with adjustable Master Cylinder rod (HYDX1.50 and HYDX.750) Make sure clutch pedal is 1/2"-3/4" above brake pedal.
- If these two steps check out, before you remove the transmission, you can manually test the clutch with an "H" bar style steering wheel puller. If you do this with the truck running, make sure to block the tires, and all safety precautions are taken. DO NOT step on the clutch pedal with the slave cylinder removed.
- Now remove the Slave Cylinder from the bell housing** and attach the steering wheel puller in its place. Using the threaded rod of the puller, tighten it by hand into the clutch release fork, where the slave cylinder rod would normally go. Tighten it as much as you can with your hand, then using a wrench turn the rod in 7/8ths of an inch and stop. With the truck running and the puller on, see if it shifts into gear. If it's working fine the hydraulics may need to be bled or possibly a new system needs to be installed. If the problem doesn't change or gets worse, then the transmission will have to be removed. A fluid change on the transmission could be in order.
** With the slave cylinder removed, make sure the clutch fork is able to move between the pressure plate and bellhousing 1/2in-3/4in. If the fork is pinned up against the bellhousing, or the free travel is more than the measurement provide then the transmission will have to be removed and clutch inspected.
If you have the means and the time to pull it and inspect it you might as well have a new clutch on standby ready to go in if you don't see anything glaringly wrong. Make sure the input shaft splines are clean and clear as well as the clutch disc splines. If you want to try reusing the south bend dual disc, I would clean the rust off the flywheel, floater, and pressure plate with a scotch brite on the mating surface and
LIGHTLY scuff the disc's pucks with the scotch brite. Dust everything off and wipe it down the fly, floater and pressure with brake clean.
I say all this under the assumption that the transmission was rebuilt correctly.
My .02: if you like the South Bend Dual disk you have and haven't had any issues out of it; then stick with it. you got lucky. South bends dual disks for the NV5600 are notoriously crappy alongside their Koyo Clutch release bearings which are known for premature failure. If you need a clutch I'd recommend Valair, according to the people that have switched from a south bend dual disk to a valair they say its a night and day difference in noise, driveability and ease of operation. When I get the time I'm hoping to put my issues to rest with a Valair dual disk. I do not recommend south bend dual disc products for the Dodge/Ram Diesel Pickups. I had a South bend HD dual disc organic and it never shifted right, the plates dragged for the longest time on shifts and the rattle from the floater was terrible.
Hope this helps.