I have heard bits and pieces that the location of the crank sensor is different than on the earlier 4.0. @Blaze may be able to confirm this. I think that is an 05-06 thing but I could be wrong. You may be able to still get everything to work if you use the correct flywheel. Crank sensor will have to be wired to your original pigtail.
It will physically bolt in. Trans mount will probably have to be fabbed. I’d throw an ax15 or nv3550 in there before the 6 speed. They are better transmissions. The 6 speed nsg370 has a few common problems with synchros and popping out of gear. The short first gear is nice though.
The NVG360 has the crank sensor in a different location than the AX series did. I venture to say you will need the matching flywheel ASSuming the balance is the same (cannot see for the life of me why it would be different)
Pretty sure they have differences in the years. 91-92 are different than 93-95 and then 96+ I think. Might be a little difference i 00+ too but can't remember. But yes, Jody is right on the crank sensor being different in the NVG360.