I think its pretty common, mine do the same. You can bypass the windows lockout switch on the drivers side door, or clean up the contacts, I can't remember the details. Search JU or NAXJA.
i ahve the same thing on my 98 xj the windows only work from drivers control no where else. i was told by the deaership that it can be one of a few things, bad swicthes, cut wire( split) or a bad ground, it can be those only if you can still work the window from the drivers controls